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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19674614_19712631_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19674614 - 19712631
Intron Length:
38018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACTG
5'SS Class:
major
3'SS Sequence:
TCCCCAAATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
TCTTCCCCAAAT
Flanking Amino Acid:
TSQNTVDSDKHFVYGRDTGQ
Intron Amino Acid Position:
1624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.4
45.1
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
60.9
0.25
0.9
52
36
Minor 5ss
34.2
-1.8
3.5
46.9
48.4
Minor BPS
55.2
0.24
2
78.67
43

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256