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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19712662_19714214_F

Intron Information:

Intron Rank:
34
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19712662 - 19714214
Intron Length:
1553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TCAACCTGGGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCCTCTTCAACC
Flanking Amino Acid:
HFVYGRDTGQLSGGCELTVV
Intron Amino Acid Position:
1634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
58
0.18
1.1
53.8
41.1
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
64.9
0.45
1.6
70.01
41.9

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256