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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19714462_19753391_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19714462 - 19753391
Intron Length:
38930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
GCTGGTATAATC
Flanking Amino Acid:
EMDCFFPSGKEAYAVSSNDN
Intron Amino Acid Position:
1716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.3
39.5
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
38.3
-1.3
3.1
50.7
46.2
Minor BPS
43.4
-0.5
2
51.01
40.7

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256