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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19754628_19759729_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19754628 - 19759729
Intron Length:
5102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GGGGTTTTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTAAT
U12 Branch Point Sequence:
TTTTCTGTTGTT
Flanking Amino Acid:
FDNDPTQDEMTLEGGSYRGT
Intron Amino Acid Position:
1846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
77.2
37.6
Major BPS
51.5
0.04
1.5
55.4
48.1
Major PPT
63.8
0.31
1
57.7
43.2
Minor 5ss
38
-1.3
3.3
54.4
43.7
Minor BPS
38.2
-0.8
3.8
74.98
42.9

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256