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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19758133_19759729_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19758133 - 19759729
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GGGGTTTTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTAAT
U12 Branch Point Sequence:
TTTTCTGTTGTT
Flanking Amino Acid:
AIEKLVKSKLTLEGGSYRGT
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
51.5
0.04
1.5
55.4
48.1
Major PPT
63.8
0.31
1
57.7
43.2
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
38.2
-0.8
3.8
74.98
42.9

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024236
19733353 - 19803253
69901