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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19822163_19823081_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19822163 - 19823081
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGCCCT
5'SS Class:
major
3'SS Sequence:
CCCTCCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
TGCTCCAGAGCT
Flanking Amino Acid:
KSNLTVLKEPACSSAPSAVT
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
58.9
45.7
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
80.6
0.69
0.7
71.9
32.6
Minor 5ss
42
-0.9
2.9
58
46.2
Minor BPS
48.6
-0
2
71.09
45

Associated Gene:

Gene:
ITGB5
Ensembl Gene ID:
ENSAPLG00000007419
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007804
19821467 - 19871445
49979