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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19826614_19827673_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19826614 - 19827673
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTATCTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
TTATCTTTCATA
Flanking Amino Acid:
DEIITTVDVLSHILQVLYLA
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
80.2
0.68
0.8
76.5
31.9
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
65
0.47
1.7
75.68
36.2

Associated Gene:

Gene:
ITGB5
Ensembl Gene ID:
ENSAPLG00000007419
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017466
19825458 - 19871445
45988