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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19880371_19881629_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19880371 - 19881629
Intron Length:
1259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
AAATTCTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
CTTGTCCAAATT
Flanking Amino Acid:
RFLDGDYDDVYDMSREPEGF
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
69
0.43
0.9
60
41.7
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
46.5
-0.1
2
67.26
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008199
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008516
19880111 - 19894249
14139