About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19881829_19882634_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19881829 - 19882634
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTCCTCTGAAG
Flanking Amino Acid:
LVVAVSVVSVRAKHSKDPEK
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
72.1
0.5
1
72.3
32.7
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
48.9
-0.2
1.8
62.17
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008199
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008516
19880111 - 19894249
14139