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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19884759_19885873_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19884759 - 19885873
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTCACCT
Flanking Amino Acid:
NFKEEGEKCVSCPVGYSGQN
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.8
0.56
0.9
70.8
35
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
54.4
0.22
1.8
74.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008199
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008516
19880111 - 19894249
14139