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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19885986_19887206_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
19885986 - 19887206
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGAAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CTATCTTCAATT
Flanking Amino Acid:
KTEWDDRSCSDCSSDCSANN
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
56.2
0.14
1
51.5
35.8
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
64.4
0.53
1.5
76.74
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008199
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008516
19880111 - 19894249
14139