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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19890301_19892026_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19890301 - 19892026
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TTATCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTGGCTTTAACT
Flanking Amino Acid:
QQMSENLTAFFKAAFNLTDY
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
66.6
32.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
88.8
0.87
0.7
83.9
30.8
Minor 5ss
30.1
-2.3
3.2
40.3
40.2
Minor BPS
77.3
0.94
1.3
87.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008199
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008516
19880111 - 19894249
14139