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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19920026_19921437_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19920026 - 19921437
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAGC
5'SS Class:
major
3'SS Sequence:
GTCCTCCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAG
U12 Branch Point Sequence:
GTCCTCCCAACA
Flanking Amino Acid:
FISSLKPLHRVGSLCKQKDP
Intron Amino Acid Position:
1173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
50.2
0.01
1.5
54.7
43.1
Major PPT
68.2
0.41
0.9
62.4
33.4
Minor 5ss
39.1
-1.2
3
52.1
44.7
Minor BPS
46.8
-0.2
1.9
58.52
40.6

Associated Gene:

Gene:
HEG1
Ensembl Gene ID:
ENSAPLG00000021885
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032873
19909035 - 19933991
24957