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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19922141_19922870_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19922141 - 19922870
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCTCTCCTCACA
Flanking Amino Acid:
KQLEGEILAMLDASLSGLPG
Intron Amino Acid Position:
1100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
86.6
0.82
0.7
84.4
23.5
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
48.3
-0.1
2.1
64.87
41.6

Associated Gene:

Gene:
HEG1
Ensembl Gene ID:
ENSAPLG00000021885
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032873
19909035 - 19933991
24957