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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19924427_19926713_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19924427 - 19926713
Intron Length:
2287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGATCTTTTATT
Flanking Amino Acid:
TAGVRTSPATDVDKCLSNPC
Intron Amino Acid Position:
1028

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.8
0.69
0.8
76.3
32.3
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
63.7
0.51
1.6
77.22
39.7

Associated Gene:

Gene:
HEG1
Ensembl Gene ID:
ENSAPLG00000021885
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032873
19909035 - 19933991
24957