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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19931068_19931702_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19931068 - 19931702
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCGTTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TATGTATAAACC
Flanking Amino Acid:
SSSASGSAATAEGAITSSRG
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.2
0.61
0.9
68.7
42
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
48.7
-0.1
2
64.04
41.5

Associated Gene:

Gene:
HEG1
Ensembl Gene ID:
ENSAPLG00000021885
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032873
19909035 - 19933991
24957