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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19932024_19932952_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19932024 - 19932952
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTGCCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGTATATAAAT
Flanking Amino Acid:
ALPASENTSRAAGSSYQPSN
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67.8
0.4
0.9
62.4
39.4
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
48.9
-0
1.9
69.78
40.7

Associated Gene:

Gene:
HEG1
Ensembl Gene ID:
ENSAPLG00000021885
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032873
19909035 - 19933991
24957