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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19967329_19970741_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19967329 - 19970741
Intron Length:
3413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
AAGTAATCAACT
Flanking Amino Acid:
LRYDFMIAEKVSLVGFLFLL
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
78.2
0.64
0.8
69.6
36.8
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
47.9
-0
2
66.82
42.9

Associated Gene:

Gene:
SLC12A8
Ensembl Gene ID:
ENSAPLG00000008520
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008862
19955127 - 20003134
48008