Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19978535_19994818_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19978535 - 19994818

Intron Length:

16284

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGCCG

5'SS Class:

major

3'SS Sequence:

CCTGTGTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAT

U12 Branch Point Sequence:

CATGTCTGAGGC

Flanking Amino Acid:

VIGSFSHLDPEHGFVGYSEE

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

60.3

44.2

Major BPS

0.65

1.1

77.4

37.3

Major PPT

75.6

0.58

0.9

68.7

37.2

Minor 5ss

30.4

-2.2

3.3

39.3

46.1

Minor BPS

41.5

-0.6

1.9

47.47

42.2

Associated Gene:

Gene:

SLC12A8

Ensembl Gene ID:

ENSAPLG00000008520

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026409

19955127 - 20003134

48008

ENSAPLT00000008862

19955127 - 20003134

48008