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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20028562_20032865_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20028562 - 20032865
Intron Length:
4304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGCAAT
5'SS Class:
major
3'SS Sequence:
CTTTTTAAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAAAT
Flanking Amino Acid:
QGLQYAVNVPILTINEDGSL
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
71.3
40.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70
0.45
1
67.6
36.8
Minor 5ss
44
-0.7
3
67.6
43.1
Minor BPS
58
0.33
1.8
75.95
41.3

Associated Gene:

Gene:
ZNF148
Ensembl Gene ID:
ENSAPLG00000008859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041720
20019206 - 20033195
13990