About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20075307_20076195_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20075307 - 20076195
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTCTT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TTGTTTTTCATA
Flanking Amino Acid:
KQQCEELATGTMRTFSLKGM
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
71.6
40.2
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
83.2
0.75
0.7
80.1
32
Minor 5ss
36
-1.6
3.1
46.8
42.6
Minor BPS
57.7
0.24
1.7
69.78
37.7

Associated Gene:

Gene:
SNX4
Ensembl Gene ID:
ENSAPLG00000009074
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009479
20073145 - 20104450
31306