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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20076296_20077536_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20076296 - 20077536
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ACTTACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTACTT
Flanking Amino Acid:
KEYLFYAEALRAVCRKHELM
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.2
0.7
0.8
77.5
35.9
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
60.9
0.42
1.9
80.74
41.5

Associated Gene:

Gene:
SNX4
Ensembl Gene ID:
ENSAPLG00000009074
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009479
20073145 - 20104450
31306