Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20083372_20084883_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20083372 - 20084883

Intron Length:

1512

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

TTAAATGTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TAACTTTTAAAT

Flanking Amino Acid:

VISHLLRVRARVADRLYGVY

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

84.2

33.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

69.5

0.44

66.4

44.5

Minor 5ss

44.6

-0.6

2.9

70.4

39.5

Minor BPS

61.1

0.43

1.3

72.66

37.6

Associated Gene:

Gene:

SNX4

Ensembl Gene ID:

ENSAPLG00000009074

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009479

20073145 - 20104450

31306