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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20084957_20089081_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20084957 - 20089081
Intron Length:
4125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TAATGATGTACT
Flanking Amino Acid:
NATFRVKNPDKRFTELKHYS
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77
0.61
0.8
68.7
37.2
Minor 5ss
44.2
-0.6
3.1
60.1
38.6
Minor BPS
42.6
-0.5
2.3
64.45
45.1

Associated Gene:

Gene:
SNX4
Ensembl Gene ID:
ENSAPLG00000009074
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009479
20073145 - 20104450
31306