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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20089138_20093028_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20089138 - 20093028
Intron Length:
3891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTACT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
ATTAAATTAACA
Flanking Amino Acid:
MVNETGFQLKADSRLKALNA
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
86.4
28.9
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
84.8
0.78
0.7
82.9
25.6
Minor 5ss
38.4
-1.3
2.7
52.9
43.7
Minor BPS
59
0.28
1.8
73.51
37.2

Associated Gene:

Gene:
SNX4
Ensembl Gene ID:
ENSAPLG00000009074
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009479
20073145 - 20104450
31306