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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20094313_20094388_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20094313 - 20094388
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGCCATTAACA
Flanking Amino Acid:
IVVPPLPEKRADFVWHKLSA
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
69.6
42.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.9
0.52
0.9
70.7
33.9
Minor 5ss
31.2
-2.2
3.1
31.4
42.6
Minor BPS
69.7
0.62
1.6
78.47
37.6

Associated Gene:

Gene:
SNX4
Ensembl Gene ID:
ENSAPLG00000009074
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009479
20073145 - 20104450
31306