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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20094528_20103288_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20094528 - 20103288
Intron Length:
8761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAATGTTCAAAC
Flanking Amino Acid:
ETYTAYLIETRAVESQNEGQ
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
46.7
-0.2
2
58.11
40.3

Associated Gene:

Gene:
SNX4
Ensembl Gene ID:
ENSAPLG00000009074
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009479
20073145 - 20104450
31306