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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20144315_20144938_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20144315 - 20144938
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AACTTCTGAAAA
Flanking Amino Acid:
PIEKQGPFESRRLWQHVTES
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
75.4
0.57
0.9
69.6
36.1
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
54
0.12
1.5
61.03
38.4

Associated Gene:

Gene:
OSBPL11
Ensembl Gene ID:
ENSAPLG00000009471
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009881
20142933 - 20175852
32920