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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20161784_20162318_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20161784 - 20162318
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATCACCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTTGCTTTATCA
Flanking Amino Acid:
YTNLVTGWQYRFFVLNNDAG
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.9
88.2
28.2
Major BPS
78.3
0.7
1
80
32.1
Major PPT
70.8
0.47
0.9
63
37.5
Minor 5ss
46.6
-0.3
2.9
68.1
42.7
Minor BPS
67.1
0.53
1.7
78.76
38.3

Associated Gene:

Gene:
OSBPL11
Ensembl Gene ID:
ENSAPLG00000009471
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009881
20142933 - 20175852
32920