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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20197442_20197636_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20197442 - 20197636
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAGG
5'SS Class:
major
3'SS Sequence:
TCCTCTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTTCCTCTGATG
Flanking Amino Acid:
VAEAFARTGKSIEQLENEML
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
67.1
44
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
82.1
0.72
0.7
80.7
24.6
Minor 5ss
33.4
-1.9
3.2
40
40.1
Minor BPS
53
-0
1.7
64.6
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009748
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010158
20184971 - 20199241
14271