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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20208352_20208991_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20208352 - 20208991
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CACTGCCTATTT
Flanking Amino Acid:
FPKQLPQEYQYFDNLNGVPA
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
63.7
37.1
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
42.7
-0.8
3
56.4
47.7
Minor BPS
42.2
-0.5
2.2
57.12
45.9

Associated Gene:

Gene:
LMLN
Ensembl Gene ID:
ENSAPLG00000009923
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010337
20205411 - 20217839
12429