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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20209125_20210544_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20209125 - 20210544
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTGTAAACT
Flanking Amino Acid:
RITLALMEDTGRQLISPYCD
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.2
32.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
77.8
0.63
1.7
92.3
26.6
Minor 5ss
38.2
-1.3
3.4
49.9
46.4
Minor BPS
59.7
0.38
2.3
86.99
39.2

Associated Gene:

Gene:
LMLN
Ensembl Gene ID:
ENSAPLG00000009923
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010337
20205411 - 20217839
12429