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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20210622_20212245_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20210622 - 20212245
Intron Length:
1624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTGCT
5'SS Class:
major
3'SS Sequence:
TTGTAACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAACTTGTAACT
Flanking Amino Acid:
LNHWEKRLLENEAMTGSHTQ
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.9
39.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78.5
0.64
0.9
74.7
39.9
Minor 5ss
30.3
-2.3
3.3
42
44.7
Minor BPS
50.7
0.1
2
70.92
39.9

Associated Gene:

Gene:
LMLN
Ensembl Gene ID:
ENSAPLG00000009923
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010337
20205411 - 20217839
12429