About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20213157_20213876_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20213157 - 20213876
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
ATTCTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
ACATCCGTAACT
Flanking Amino Acid:
YADGLPPFNESLGLYQWSDK
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.5
38.4
Major BPS
79
0.72
1
80.3
31.7
Major PPT
86.6
0.82
0.7
80.6
30.7
Minor 5ss
42
-0.9
2.8
58.7
45.8
Minor BPS
63.6
0.5
2
79.18
42.8

Associated Gene:

Gene:
LMLN
Ensembl Gene ID:
ENSAPLG00000009923
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010337
20205411 - 20217839
12429