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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20213972_20214203_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20213972 - 20214203
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGAACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGATTTTGAACT
Flanking Amino Acid:
TVKHEIIHALGFSAGLFAFY
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
78.7
35.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78
0.63
0.9
70.7
39.8
Minor 5ss
35.3
-1.7
3.8
52.2
46
Minor BPS
65.4
0.56
1.4
78.22
37.7

Associated Gene:

Gene:
LMLN
Ensembl Gene ID:
ENSAPLG00000009923
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010337
20205411 - 20217839
12429