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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20214310_20214922_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20214310 - 20214922
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AACTGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTACTGAAAA
Flanking Amino Acid:
AYCQLEAEMDRPIAGYANLC
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.7
0.51
1
62.3
43.5
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
64.3
0.44
1.7
79.27
36

Associated Gene:

Gene:
LMLN
Ensembl Gene ID:
ENSAPLG00000009923
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010337
20205411 - 20217839
12429