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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20215093_20216233_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20215093 - 20216233
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
AACATTGTCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTATTTTAACT
Flanking Amino Acid:
PVIVPEKHLQQCRVYNQNER
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
53.1
0.07
1.1
51.6
41
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
74.3
0.84
1.2
85.02
35.1

Associated Gene:

Gene:
LMLN
Ensembl Gene ID:
ENSAPLG00000009923
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010337
20205411 - 20217839
12429