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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20233823_20234366_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20233823 - 20234366
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGGCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
GTTCAGTTAATA
Flanking Amino Acid:
VAVTTFLKNIDTQEFVNKCE
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.1
0.65
0.9
72.5
37.8
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
49.5
-0
2.2
66.77
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010062
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026313
20218328 - 20240322
21995