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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20238161_20238251_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20238161 - 20238251
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATAAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGCTTTAATT
Flanking Amino Acid:
AYEEKIVHKKAPDAMSNLQR
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
81.7
25.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.7
0.62
0.9
75.5
38.5
Minor 5ss
29
-2.4
2.7
32.7
42.2
Minor BPS
80.1
1.02
1.2
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010062
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026313
20218328 - 20240322
21995
ENSAPLT00000010494
20219296 - 20240322
21027