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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20249137_20249284_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20249137 - 20249284
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTGTGCTGACGC
Flanking Amino Acid:
RLIALYDNEEVGSESAQGAE
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
66.9
0.38
1
61.7
40
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
43.5
-0.5
2.3
58.56
46.4

Associated Gene:

Gene:
DNPEP
Ensembl Gene ID:
ENSAPLG00000012698
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013229
20247676 - 20260017
12342