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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20249369_20249666_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20249369 - 20249666
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCATCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
TCCTCCTCCATC
Flanking Amino Acid:
NLHSCFCALQALIDSCTAPS
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
75.4
0.57
0.8
65.8
35.9
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
49.7
-0
2
61.86
44.3

Associated Gene:

Gene:
DNPEP
Ensembl Gene ID:
ENSAPLG00000012698
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013229
20247676 - 20260017
12342