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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20250400_20250552_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20250400 - 20250552
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CATCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GTTTGCTGATGG
Flanking Amino Acid:
ESFGPNTEHHLVPILATAVQ
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
68.7
42
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
72.5
0.51
0.8
65.9
29.7
Minor 5ss
39.8
-1.1
3.1
61.7
42.2
Minor BPS
42.5
-0.7
2.3
52.81
47.4

Associated Gene:

Gene:
DNPEP
Ensembl Gene ID:
ENSAPLG00000012698
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013229
20247676 - 20260017
12342