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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20259210_20260750_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20259210 - 20260750
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
GTCCCCCTAATG
Flanking Amino Acid:
LLDDLQKLKQRLQEEIQLKE
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
74.3
0.55
0.8
65.5
36.1
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
53.1
-0
1.8
58.5
43.1

Associated Gene:

Gene:
DES
Ensembl Gene ID:
ENSAPLG00000027827
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045083
20258636 - 20453993
195358
ENSAPLT00000022918
20258635 - 20339546
80912