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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20277084_20278359_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20277084 - 20278359
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GGGCTCTGACCC
Flanking Amino Acid:
PSAWQPQGTPSSIPQGGYRR
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.9
75
41.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
83
0.74
0.7
76.9
25
Minor 5ss
28.4
-2.5
3.8
39
46.4
Minor BPS
45.2
-0.3
1.7
50.02
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027821
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034203
20265730 - 20297272
31543