Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20287378_20287469_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

20287378 - 20287469

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAGGGCCC

5'SS Class:

weak_major

3'SS Sequence:

TCTGTCCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TGCTGCTGACGG

Flanking Amino Acid:

DSTDDRKMMQYKDIHRLVFT

Intron Amino Acid Position:

1282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.1

0.14

1.2

49.7

37.7

Major BPS

66.3

0.4

1.1

41.8

Major PPT

74.9

0.56

0.8

35.9

Minor 5ss

32.6

-2

3.6

43.2

44.1

Minor BPS

39.5

-0.9

2.3

44.32

47.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027821

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034203

20265730 - 20297272

31543