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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20287820_20287891_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20287820 - 20287891
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCGTGCTGACCC
Flanking Amino Acid:
NKPKWLDTAIDPSSVTYVVQ
Intron Amino Acid Position:
1357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
68.6
0.42
0.9
62.5
33.5
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
43.6
-0.5
2.1
50.23
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027821
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034203
20265730 - 20297272
31543