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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20288356_20288473_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20288356 - 20288473
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CGTGTGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GTGTGCCCACAG
Flanking Amino Acid:
NHVEATVTWRRGGQVLGEQD
Intron Amino Acid Position:
1467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
65.5
0.35
1
57.2
38.8
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
34
-1.3
2.2
38.35
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027821
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034203
20265730 - 20297272
31543