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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20289804_20289894_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20289804 - 20289894
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCCA
5'SS Class:
major
3'SS Sequence:
TCCTTCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
CGCCCCCCAGCC
Flanking Amino Acid:
SCKAELVVRSAQPAADASME
Intron Amino Acid Position:
1619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
63.4
42.7
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
77.4
0.62
0.7
69.3
31.4
Minor 5ss
30
-2.3
3.4
39.7
45.8
Minor BPS
40.3
-0.7
2
45.87
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027821
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034203
20265730 - 20297272
31543