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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20289989_20290122_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20289989 - 20290122
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CCCCACGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CCCTCCCCACGT
Flanking Amino Acid:
DYYDVHEEIGRGAFSYLRRV
Intron Amino Acid Position:
1650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
68.1
0.41
0.9
60.2
35
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
38.7
-0.7
2.2
51.96
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027821
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034203
20265730 - 20297272
31543