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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20290495_20290692_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20290495 - 20290692
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CCATCCCCACCC
Flanking Amino Acid:
ARKPSVCESEVRSYMRQILE
Intron Amino Acid Position:
1738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.4
38.7
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
73
0.52
1
69.1
37
Minor 5ss
25.2
-2.9
3.2
30
43.6
Minor BPS
43.3
-0.5
2.1
51.97
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027821
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034203
20265730 - 20297272
31543